Category 1
APPLICATIONS
- e2bdb
- e2boxer
- e2display
- sx3dvariability
- sxali2d
- sxali3d
- sxali_vol
- sxave_ali
- sxbmask
- sxcopyfromtif
- sxcpy
- sxcter
- sxfactcoords
- sxfilterlocal
- sxfind_struct
- sxgenbuf
- sxgui
- sxgui_cter
- sxhac_averages
- sxhac_clustering
- sxheader
- sxhelical_demo
- sxhelicon
- sxhelicon_utils
- sxheliconlocal
- sxhelixboxer
- sximgstat
- sxisac
- sxk_means
- sxk_means_groups
- sxlocal_ali2d
- sxlocal_ali3d
- sxlocal_ali3dm
- sxlocres
- sxmeridien
- sxmref_ali2d
- sxmref_ali3d
- sxobsoleted_isac
- sxparams_2D_to_3D
- sxparams_3D_to_2D
- sxpca
- sxpdb2em
- sxplot_projs_distrib
- sxprocess
- sxproject3d
- sxrecons3d_f
- sxrecons3d_n
- sxrelion2sparx
- sxreproducibility
- sxresample
- sxrot_sym
- sxrsort3d
- sxrviper
- sxshiftali
- sxsort3d
- sxspliteigen
- sxssnr3d
- sxstability
- sxtransform2d
- sxunblur
- sxvar
- sxvarimax
- sxviper
- sxwindow
FILTER
- filt_btwh
- filt_btwl
- filt_btwo
- filt_ctf
- filt_from_fsc
- filt_from_fsc_bwt
- filt_gaussb
- filt_gaussh
- filt_gaussinv
- filt_gaussl
- filt_gausso
- filt_median
- filt_params
- filt_table
- filt_tanb
- filt_tanh
- filt_tanl
- filt_tano
- filt_tophatb
- filt_tophath
- filt_tophatl
- filt_tophato
- rsconvolution
FUNDAMENTALS
- acf
- acfn
- acfnp
- acfnpl
- acfp
- acfpl
- alog10
- ccf
- ccfn
- ccfnp
- ccfnpl
- ccfp
- ccfpl
- cnv
- cnvn
- cnvnp
- cnvnpl
- cnvp
- cnvpl
- cog
- cyclic_shift
- find_3d_threshold
- flcc
- fpol
- fshift
- image_decimate
- mirror
- periodogram
- phase_cog
- power
- prepg
- prepi
- ramp
- resample
- ro_textfile
- rops
- rops_table
- rops_textfile
- rot_avg
- rot_avg_image
- rot_shift
- rot_shift2D
- rot_shift3D
- rotshift2dg
- rtshg
- rtshgkb
- scf
- scfn
- scfnp
- scfnpl
- scfp
- scfpl
- subsample
- sxwindow
- transformClass
- window
HISTOGRAMOPERATIONS
INVERSION
MORPHOLOGY
- binarize
- collapse
- ctf_1d
- ctf_2
- ctf_img
- dilation
- erosion
- expn
- flcc3d
- generate_ctf
- histogram
- notzero
- square
- square_root
- threshold
- threshold_maxval
- threshold_outside
- threshold_to_minval
- threshold_to_zero
SEGMENTATION
STATISTICS
- aves_w
- ccc
- fsc
- fsc_mask
- get_1dpw_table_stack
- get_power_spec
- noise_corrected_PW
- pixel_error_angle_sets
TRANSFORMS
UTILITIES
- add_img
- add_img2
- add_series
- addn_img
- align2d
- avgvar
- avgvar_CTF
- ce_fit
- center_2D
- common_line_in3D
- compose_transform2
- compose_transform3
- compress_image_mask
- decimate
- defocus_get
- drop_image
- drop_spider_doc
- even_angles
- find_inplane_to_match
- gauss_edge
- get_eigen_images
- get_image
- get_imf_params
- get_inplane_angle
- get_nsym
- im_diff
- imf_params_cl1
- info
- inverse_transform2
- inverse_transform3
- linchange
- list_syms
- mad_scalar
- madn_scalar
- model_blank
- model_circle
- model_cylinder
- model_gauss
- model_gauss_noise
- mul_img
- mul_scalar
- muln_img
- mult_scalar
- pad
- peak_search
- print_col
- print_image
- print_image_col
- print_image_row
- print_image_slice
- print_row
- print_slice
- pw_extract
- read_spider_doc
- read_text_file
- read_text_row
- reconstitute_image_mask
- reconstitute_mask
- rops_dir
- rotate_about_center
- rotation_between_anglesets
- set_arb_params
- sideprojectionmatch
- sidewinder
- smallprime
- splitstack
- sub_img
- subn_img
- sxprocess
- sxwindow
- sym_vol
- symmetry
- twoDTestFunc
- update_attrt
- vrdg
- write_text_file
- write_text_row
Category 2
ADAPTIVE
FOURIER
- acf
- acfn
- acfnp
- acfnpl
- acfp
- acfpl
- ccf
- ccfn
- ccfnp
- ccfnpl
- ccfp
- ccfpl
- cnv
- cnvn
- cnvnp
- cnvnpl
- cnvp
- cnvpl
- fft
- fftip
- filt_btwh
- filt_btwl
- filt_btwo
- filt_ctf
- filt_from_fsc_bwt
- filt_gaussb
- filt_gaussh
- filt_gaussinv
- filt_gaussl
- filt_gausso
- filt_table
- filt_tanb
- filt_tanh
- filt_tanl
- filt_tano
- filt_tophatb
- filt_tophath
- filt_tophatl
- filt_tophato
- flcc
- flcc3d
- fpol
- fsc
- fsc_mask
- fshift
- info
- periodogram
- prep_vol
- prepg
- prepi
- prg
- prgs
- prj
- recons3d_4nn
- recons3d_4nn_ctf
- recons3d_nn_SSNR
- recons3d_wbp
- rops
- rops_table
- rops_textfile
- scf
- scfn
- scfnp
- scfnpl
- scfp
- scfpl
- sxali2d
- sxmref_ali2d
- sxproject3d
- sxrecons3d_f
- sxssnr3d
NONLINEAR
SPATIAL
- alog10
- binarize
- ccc
- ce_fit
- cog
- collapse
- common_line_in3D
- compose_transform2
- compose_transform3
- compress_image_mask
- cyclic_shift
- decimate
- dilation
- erosion
- expn
- filt_median
- find_inplane_to_match
- get_nsym
- histogram
- im_diff
- info
- inverse_transform2
- inverse_transform3
- mirror
- model_blank
- model_circle
- model_cylinder
- model_gauss
- model_gauss_noise
- notzero
- phase_cog
- power
- print_col
- print_image
- print_image_col
- print_image_row
- print_image_slice
- print_row
- print_slice
- project
- ramp
- recons3d_sirt
- reconstitute_image_mask
- ro_textfile
- rops
- rops_table
- rops_textfile
- rot_avg
- rot_avg_image
- rot_shift
- rot_shift3D
- rotate_about_center
- rotshift2dg
- rsconvolution
- rtshg
- rtshgkb
- square
- square_root
- sxali_vol
- sym_vol
- symmetry
- threshold
- threshold_maxval
- threshold_outside
- threshold_to_minval
- threshold_to_zero
- twoDTestFunc
- window